EnhancerDB
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  3. rs116641679[chr1:94234055]
Enhancers that have rs116641679[chr1:94234055]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 94213125 94252475 enh499
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
chr1 94234014 94234407 vista2513
VISTA
Transcript factors that have rs116641679[chr1:94234055]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 94233686 94234257 ZNF274 GTRD no Liver (HepG2) 107815199
chr1 94233715 94234285 ZNF274 GTRD no Liver (HepG2) 107815200
chr1 94233742 94234123 ZNF143 GTRD no Epithelial (MCF-7) 107815201
chr1 94233746 94234248 ZNF143 GTRD no Epithelial (MCF-7) 107815202
chr1 94233771 94234111 ZNF143 GTRD no Epithelial (MCF-7) 107815203
chr1 94233773 94234132 ZBTB33 GTRD no Lung (A549) 107815204
chr1 94233799 94234249 ZNF274 GTRD no Liver (HepG2) 107815205
chr1 94233869 94234289 ZBTB33 GTRD no Lung (A549) 107815206
chr1 94233917 94234310 ZBTB33 GTRD no Brain (SK-N-SH) 107815207
chr1 94233947 94234543 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107815208
chr1 94234042 94234056 TLX1 JASPAR yes 30833787
chr1 94234042 94234056 TLX1 JASPAR yes 118331315
chr1 94234047 94234062 STAT1 JASPAR yes 30833788
chr1 94234047 94234062 STAT1 JASPAR yes 118331316
chr1 94234049 94234060 STAT1 JASPAR yes 30833789
chr1 94234049 94234060 STAT3 JASPAR yes 30833790
chr1 94234049 94234060 STAT1 JASPAR yes 118331317
chr1 94234049 94234060 STAT3 JASPAR yes 118331318
Genes associated with rs116641679[chr1:94234055], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More