EnhancerDB
  1. Home
  2. SNP
  3. rs116675565[chr19:10983855]
Enhancers that have rs116675565[chr19:10983855]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 10983285 11012541 enh5003
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr19 10983653 10983862 vista28608
VISTA
Transcript factors that have rs116675565[chr19:10983855]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 10983385 10984913 ZNF143 GTRD no Epithelial (MCF-7) 21849085
chr19 10983385 10984913 ZNF143 GTRD no Epithelial (MCF-7) 108384154
chr19 10983385 10984913 ZNF143 GTRD no Epithelial (MCF-7) 108384155
chr19 10983742 10984673 ZNF143 GTRD no Epithelial (MCF-7) 21849087
chr19 10983742 10984673 ZNF143 GTRD no Epithelial (MCF-7) 108384157
chr19 10983762 10984157 ZNF274 GTRD no Blood (GM12878) 21849088
chr19 10983762 10984157 ZNF274 GTRD no Blood (GM12878) 108384158
chr19 10983768 10985337 ZNF143 GTRD no Epithelial (MCF-7) 21849089
chr19 10983768 10985337 ZNF143 GTRD no Epithelial (MCF-7) 108384159
chr19 10983774 10984874 TCF7L2 GTRD no Colon (HCT116) 21849090
chr19 10983774 10984874 TCF7L2 GTRD no Colon (HCT116) 108384160
chr19 10983853 10983857 LFA1 TRANSFAC yes 70803332
chr19 10983853 10983857 LFA1 TRANSFAC yes 112441608
Genes associated with rs116675565[chr19:10983855], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More