EnhancerDB
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  3. rs117188212[chr3:124554255]
Enhancers that have rs117188212[chr3:124554255]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 124541185 124560055 enh20881
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs117188212[chr3:124554255]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 124553370 124554329 TCF7L2 UCSC Txn Factor no Conserved 108530137
chr3 124554249 124554257 TBX5 JASPAR yes 5405740
chr3 124554249 124554258 ZEB1 JASPAR yes 5405741
chr3 124554249 124554261 PKNOX2 JASPAR yes 5405742
chr3 124554249 124554262 ZBTB18 JASPAR yes 5405743
chr3 124554250 124554260 FIGLA JASPAR yes 5405744
chr3 124554250 124554260 ID4 JASPAR yes 5405745
chr3 124554250 124554260 TCF3 JASPAR yes 5405746
chr3 124554250 124554260 TCF4 JASPAR yes 5405747
chr3 124554251 124554260 SNAI2 JASPAR yes 5405748
chr3 124554252 124554257 USF2 TRANSFAC yes 5405749
chr3 124554255 124554259 NFE TRANSFAC yes 5405750
chr3 124554255 124554268 SMAD2 JASPAR yes 5405751
Genes associated with rs117188212[chr3:124554255], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More