EnhancerDB
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  3. rs117320180[chr12:125198558]
Enhancers that have rs117320180[chr12:125198558]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr12 125198204 125198603 vista15324
VISTA
Transcript factors that have rs117320180[chr12:125198558]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125198057 125199373 TCF7L2 GTRD no Colon (HCT116) 21582177
chr12 125198057 125199373 TCF7L2 GTRD no Colon (HCT116) 108069555
chr12 125198057 125199373 TCF7L2 GTRD no Colon (HCT116) 108069556
chr12 125198103 125198619 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21582178
chr12 125198103 125198619 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069557
chr12 125198206 125198616 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21582184
chr12 125198206 125198616 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069565
chr12 125198225 125198609 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21582186
chr12 125198225 125198609 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069567
chr12 125198236 125198616 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21582191
chr12 125198236 125198616 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069574
chr12 125198254 125198574 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21582196
chr12 125198254 125198574 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069581
chr12 125198372 125198562 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21582204
chr12 125198372 125198562 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069590
chr12 125198389 125199204 ZNF274 GTRD no Cervix (HeLa-S3) 21582205
chr12 125198389 125199204 ZNF274 GTRD no Cervix (HeLa-S3) 108069591
chr12 125198417 125198673 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21582207
chr12 125198417 125198673 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108069593
chr12 125198418 125198682 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582208
chr12 125198418 125198682 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108069594
chr12 125198428 125198652 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21582209
chr12 125198428 125198652 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108069595
chr12 125198520 125199101 ZNF274 GTRD no Bone Marrow (K562) 21582210
chr12 125198520 125199101 ZNF274 GTRD no Bone Marrow (K562) 108069596
chr12 125198550 125198558 BSX JASPAR yes 82497538
chr12 125198550 125198558 BSX JASPAR yes 124412397
chr12 125198552 125199004 ZNF143 GTRD no Epithelial (MCF-7) 21582211
chr12 125198552 125199004 ZNF143 GTRD no Epithelial (MCF-7) 108069597
chr12 125198554 125198559 TFAP2A TRANSFAC yes 82497539
chr12 125198554 125198559 TFAP2A TRANSFAC yes 124412398
chr12 125198554 125198560 MZF1 JASPAR yes 82497540
chr12 125198554 125198560 MZF1 JASPAR yes 124412399
chr12 125198555 125198570 AR JASPAR yes 82497541
chr12 125198555 125198570 AR JASPAR yes 124412400
Genes associated with rs117320180[chr12:125198558], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More