EnhancerDB
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  3. rs117424346[chr16:85239195]
Enhancers that have rs117424346[chr16:85239195]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85219145 85290912 enh16864
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs117424346[chr16:85239195]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85231788 85239840 TCF7L2 GTRD no Colon (HCT116) 21720868
chr16 85237690 85239823 TCF7L2 GTRD no Colon (HCT116) 21721104
chr16 85237856 85239829 ZNF143 GTRD no Epithelial (MCF-7) 21721108
chr16 85238881 85239547 TCF7L2 GTRD no Colon (HCT116) 21721129
chr16 85239008 85239960 TCF7L2 GTRD no Colon (HCT116) 21721130
chr16 85239061 85239808 TCF7L2 GTRD no Colon (HCT116) 21721131
chr16 85239083 85239390 ZNF274 GTRD no Liver (HepG2) 21721132
chr16 85239121 85239528 ZNF274 GTRD no Bone Marrow (K562) 21721133
chr16 85239134 85239517 ZNF274 GTRD no Blood (GM12878) 21721134
chr16 85239183 85239203 RREB1 JASPAR yes 12032433
Genes associated with rs117424346[chr16:85239195], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More