EnhancerDB
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  3. rs117483912[chr17:2796960]
Enhancers that have rs117483912[chr17:2796960]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 2744850 2808324 enh4213
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Neural Stem Cells (H9) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs117483912[chr17:2796960]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 2795210 2800120 ZNF143 GTRD no Epithelial (MCF-7) 21739739
chr17 2795210 2800120 ZNF143 GTRD no Epithelial (MCF-7) 108231314
chr17 2795546 2797014 ZNF274 GTRD no Cervix (HeLa-S3) 108231316
chr17 2795895 2799236 TCF7L2 GTRD no Colon (HCT116) 21739754
chr17 2795895 2799236 TCF7L2 GTRD no Colon (HCT116) 108231342
chr17 2796949 2796960 TFAP2A JASPAR yes 52783473
chr17 2796949 2796960 TFAP2B JASPAR yes 52783474
chr17 2796949 2796960 TFAP2C JASPAR yes 52783475
chr17 2796959 2796970 ESRRA JASPAR yes 52783476
chr17 2796959 2796970 ESRRB JASPAR yes 52783477
chr17 2796960 2796968 NR4A2 JASPAR yes 52783478
Genes associated with rs117483912[chr17:2796960], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More