EnhancerDB
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  3. rs117579928[chr16:85252440]
Enhancers that have rs117579928[chr16:85252440]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85219145 85290912 enh16864
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs117579928[chr16:85252440]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85250697 85255346 ZNF143 GTRD no Epithelial (MCF-7) 21721380
chr16 85250729 85254668 ZNF143 GTRD no Epithelial (MCF-7) 21721383
chr16 85250756 85255120 ZNF143 GTRD no Epithelial (MCF-7) 21721384
chr16 85250777 85255302 TCF7L2 GTRD no Colon (HCT116) 21721386
chr16 85250897 85252465 ZNF143 GTRD no Epithelial (MCF-7) 21721389
chr16 85250978 85255439 TCF7L2 GTRD no Colon (HCT116) 21721391
chr16 85251016 85252541 TCF7L2 GTRD no Colon (HCT116) 21721393
chr16 85251134 85255621 TCF7L2 GTRD no Colon (HCT116) 21721398
chr16 85251514 85254895 ZNF143 GTRD no Epithelial (MCF-7) 21721402
chr16 85251936 85253038 ZNF274 GTRD no Blood (GM12878) 21721405
chr16 85251951 85252452 ZBTB33 GTRD no Brain (SK-N-SH) 21721406
chr16 85251959 85255261 TCF7L2 GTRD no Colon (HCT116) 21721407
chr16 85251984 85253742 ZNF274 GTRD no Blood (GM12878) 21721408
chr16 85252045 85252481 ZNF274 GTRD no Liver (HepG2) 21721410
chr16 85252257 85252923 ZNF274 GTRD no Blood (GM12878) 21721412
chr16 85252270 85253041 ZNF274 GTRD no Blood (GM12878) 21721413
chr16 85252277 85253822 ZNF274 GTRD no Blood (GM12878) 21721414
chr16 85252324 85254232 ZNF274 GTRD no Bone Marrow (K562) 21721415
chr16 85252348 85252830 ZNF274 GTRD no Blood (GM12878) 21721416
chr16 85252372 85254174 ZNF274 GTRD no Blood (GM12878) 21721417
chr16 85252414 85252879 ZNF274 GTRD no Blood (GM12878) 21721418
chr16 85252432 85252450 RARA JASPAR yes 12034141
Genes associated with rs117579928[chr16:85252440], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More