EnhancerDB
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  3. rs117939931[chr16:89509976]
Enhancers that have rs117939931[chr16:89509976]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 89499432 89527658 enh16907
Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs117939931[chr16:89509976]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 89506818 89510107 TCF7L2 GTRD no Colon (HCT116) 21738559
chr16 89506818 89510107 TCF7L2 GTRD no Colon (HCT116) 108226235
chr16 89509969 89509983 TLX1 JASPAR yes 12344961
chr16 89509970 89509984 TLX1 JASPAR yes 12344962
chr16 89509975 89509988 SMAD2 JASPAR yes 12344963
Genes associated with rs117939931[chr16:89509976], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More