EnhancerDB
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  3. rs12040590[chr1:229357066]
Enhancers that have rs12040590[chr1:229357066]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229351665 229369695 enh12764
Liver Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs12040590[chr1:229357066]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229356713 229357369 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107877937
chr1 229356796 229357336 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107877938
chr1 229356799 229357183 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390752
chr1 229356805 229357421 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390753
chr1 229356805 229357421 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107877939
chr1 229356818 229357148 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390754
chr1 229356855 229357199 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390755
chr1 229356858 229357703 TCF7L2 UCSC Txn Factor no Conserved 107877940
chr1 229356863 229357359 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21390756
chr1 229356863 229357359 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107877941
chr1 229356868 229357652 TCF12 UCSC Txn Factor no Conserved 107877942
chr1 229356869 229357405 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107877943
chr1 229356870 229357250 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390757
chr1 229356871 229357147 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390758
chr1 229356877 229357253 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390759
chr1 229356887 229357247 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390760
chr1 229356891 229357395 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390761
chr1 229356891 229357395 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107877944
chr1 229356903 229357563 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390762
chr1 229356903 229357563 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107877945
chr1 229356921 229357151 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390763
chr1 229356921 229357241 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390764
chr1 229356925 229357315 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390765
chr1 229356925 229357712 EP300 UCSC Txn Factor no Conserved 107877946
chr1 229356932 229357236 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390766
chr1 229356933 229357273 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390767
chr1 229356938 229357178 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390768
chr1 229356944 229357241 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390769
chr1 229356945 229357183 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390770
chr1 229356955 229357179 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390771
chr1 229356955 229357215 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390772
chr1 229356962 229357218 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390773
chr1 229356970 229357340 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390774
chr1 229356970 229357340 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107877947
chr1 229356972 229357368 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390775
chr1 229356972 229357368 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107877948
chr1 229356973 229357273 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390776
chr1 229356981 229357118 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390777
chr1 229356988 229357218 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390778
chr1 229356993 229357192 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390779
chr1 229356994 229357239 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390780
chr1 229357012 229357402 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390781
chr1 229357012 229357402 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107877949
chr1 229357022 229357211 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390782
chr1 229357024 229357135 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390783
chr1 229357025 229357232 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390784
chr1 229357028 229357223 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390785
chr1 229357030 229357686 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21390786
chr1 229357030 229357686 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107877950
chr1 229357042 229357582 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107877951
chr1 229357046 229357422 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390787
chr1 229357046 229357422 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107877952
Genes associated with rs12040590[chr1:229357066], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More