EnhancerDB
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  3. rs12067434[chr1:52030379]
Enhancers that have rs12067434[chr1:52030379]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 52027839 52037840 enh360
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Prostate (RWPE1) Heart
Transcript factors that have rs12067434[chr1:52030379]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 52030378 52030388 HOXC10 JASPAR yes 28851363
chr1 52030378 52030388 HOXD11 JASPAR yes 28851364
chr1 52030378 52030389 HOXA10 JASPAR yes 28851365
chr1 52030378 52030389 HOXC11 JASPAR yes 28851366
chr1 52030378 52030389 HOXC12 JASPAR yes 28851367
chr1 52030378 52030389 HOXD12 JASPAR yes 28851368
chr1 52030379 52030388 CDX1 JASPAR yes 28851369
chr1 52030379 52030390 CDX2 JASPAR yes 28851370
Genes associated with rs12067434[chr1:52030379], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 52254863 52344477 - NRD1 ENSG00000078618.15 52344477 224484 Ovary 0.136222 691