EnhancerDB
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  3. rs12071842[chr1:171397175]
Enhancers that have rs12071842[chr1:171397175]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs12071842[chr1:171397175]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171396964 171397306 SOX2 GTRD no Neural Stem Cells (H9) 21349641
chr1 171397171 171397180 SOX9 JASPAR yes 33079503
chr1 171397172 171397187 MEF2C JASPAR yes 33079504
chr1 171397173 171397182 SRY JASPAR yes 33079505
Genes associated with rs12071842[chr1:171397175], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More