EnhancerDB
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  3. rs12085820[chr1:168458346]
Enhancers that have rs12085820[chr1:168458346]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 168433465 168471139 enh12354
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs12085820[chr1:168458346]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 168457417 168458416 FLI1 GTRD no Muscle (A673) 21348389
chr1 168458339 168458348 SNAI2 JASPAR yes 32931444
chr1 168458339 168458349 ID4 JASPAR yes 32931445
chr1 168458339 168458349 TCF3 JASPAR yes 32931446
chr1 168458339 168458349 TCF4 JASPAR yes 32931447
chr1 168458344 168458353 HIC2 JASPAR yes 32931448
Genes associated with rs12085820[chr1:168458346], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More