EnhancerDB
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  3. rs12117785[chr1:39628411]
Enhancers that have rs12117785[chr1:39628411]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12117785[chr1:39628411]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39628406 39628411 TFAP2A TRANSFAC yes 28260826
chr1 39628406 39628412 MZF1 JASPAR yes 28260827
chr1 39628407 39628417 GSC2 JASPAR yes 28260828
chr1 39628407 39628417 GSC JASPAR yes 28260829
chr1 39628408 39628416 OTX1 JASPAR yes 28260830
chr1 39628408 39628416 OTX2 JASPAR yes 28260831
chr1 39628408 39628416 RHOXF1 JASPAR yes 28260832
chr1 39628408 39628417 PITX3 JASPAR yes 28260833
Genes associated with rs12117785[chr1:39628411], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More