EnhancerDB
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  3. rs12135008[chr1:154384293]
Enhancers that have rs12135008[chr1:154384293]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 154376585 154406743 enh12276
Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12135008[chr1:154384293]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 154384278 154384297 PAX5 JASPAR yes 32289565
chr1 154384281 154384298 PAX1 JASPAR yes 32289566
chr1 154384281 154384298 PAX9 JASPAR yes 32289567
chr1 154384283 154384297 PAX6 JASPAR yes 32289568
chr1 154384292 154384300 MEIS2 JASPAR yes 32289569
chr1 154384292 154384300 MEIS3 JASPAR yes 32289570
Genes associated with rs12135008[chr1:154384293], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 155107820 155111329 + SLC50A1 ENSG00000169241.13 155107820 723527 Breast 0.100066 1323