EnhancerDB
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  3. rs12141916[chr1:19778611]
Enhancers that have rs12141916[chr1:19778611]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12141916[chr1:19778611]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19778451 19778883 ZNF143 GTRD no Epithelial (MCF-7) 107802303
chr1 19778602 19778621 CTCF JASPAR yes 27192262
chr1 19778605 19778619 GLIS2 JASPAR yes 27192263
chr1 19778605 19778619 ZIC1 JASPAR yes 27192264
chr1 19778605 19778620 ZIC3 JASPAR yes 27192265
chr1 19778605 19778620 ZIC4 JASPAR yes 27192266
Genes associated with rs12141916[chr1:19778611], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More