EnhancerDB
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  3. rs12143474[chr1:27759590]
Enhancers that have rs12143474[chr1:27759590]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27742945 27784244 enh174
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12143474[chr1:27759590]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27759582 27759597 HNF1A JASPAR yes 27693024
chr1 27759583 27759596 HNF1B JASPAR yes 27693025
chr1 27759583 27759597 POU4F1 JASPAR yes 27693026
chr1 27759583 27759599 POU4F2 JASPAR yes 27693027
chr1 27759583 27759599 POU4F3 JASPAR yes 27693028
chr1 27759588 27759592 YY1 TRANSFAC yes 27693029
chr1 27759588 27759603 MEF2C JASPAR yes 27693030
chr1 27759589 27759604 MEF2A JASPAR yes 27693031
Genes associated with rs12143474[chr1:27759590], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More