EnhancerDB
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  3. rs12144487[chr1:19798925]
Enhancers that have rs12144487[chr1:19798925]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12144487[chr1:19798925]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19798923 19798932 SNAI2 JASPAR yes 27195302
chr1 19798923 19798933 ID4 JASPAR yes 27195303
chr1 19798923 19798933 TCF3 JASPAR yes 27195304
chr1 19798923 19798933 TCF4 JASPAR yes 27195305
Genes associated with rs12144487[chr1:19798925], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 20354672 20417683 + PLA2G5 ENSG00000127472.6 20354672 555747 Uterus 0.333001 272