EnhancerDB
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  3. rs12194346[chr6:16399590]
Enhancers that have rs12194346[chr6:16399590]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 16389708 16416819 enh8977
Skin (Keratinocyte) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Stomach Uterus Blood (Karpas-422) Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Neural Stem Cells (H9) Blood (T-cell) Heart
chr6 16399265 16399639 vista51143
VISTA
Transcript factors that have rs12194346[chr6:16399590]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 16399576 16399591 STAT1 JASPAR yes 70325504
chr6 16399576 16399591 STAT1 JASPAR yes 100296732
chr6 16399588 16399599 NFKB1 JASPAR yes 70325507
chr6 16399588 16399599 NFKB1 JASPAR yes 100296735
chr6 16399589 16399599 NFKB1 JASPAR yes 70325508
chr6 16399589 16399599 NFKB1 JASPAR yes 100296736
chr6 16399589 16399604 PRDM1 JASPAR yes 70325509
chr6 16399589 16399604 PRDM1 JASPAR yes 100296737
Genes associated with rs12194346[chr6:16399590], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More