EnhancerDB
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  3. rs12196299[chr6:43059361]
Enhancers that have rs12196299[chr6:43059361]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 43045645 43067063 enh23249
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs12196299[chr6:43059361]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 43059345 43059361 POU4F2 JASPAR yes 101752787
chr6 43059345 43059361 POU4F3 JASPAR yes 101752788
chr6 43059352 43059362 EMX1 JASPAR yes 101752802
chr6 43059352 43059362 GSX1 JASPAR yes 101752803
chr6 43059352 43059362 GSX2 JASPAR yes 101752804
chr6 43059352 43059362 HOXB2 JASPAR yes 101752805
chr6 43059352 43059362 MEOX1 JASPAR yes 101752806
chr6 43059352 43059362 MEOX2 JASPAR yes 101752807
chr6 43059352 43059362 POU6F1 JASPAR yes 101752808
chr6 43059353 43059361 LMX1A JASPAR yes 101752809
chr6 43059353 43059361 LMX1B JASPAR yes 101752810
chr6 43059353 43059361 NKX6-1 JASPAR yes 101752811
chr6 43059353 43059361 NKX6-2 JASPAR yes 101752812
chr6 43059353 43059361 PDX1 JASPAR yes 101752813
chr6 43059353 43059361 VAX1 JASPAR yes 101752814
chr6 43059353 43059361 VAX2 JASPAR yes 101752815
chr6 43059353 43059361 VSX1 JASPAR yes 101752816
Genes associated with rs12196299[chr6:43059361], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More