EnhancerDB
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  3. rs12199356[chr6:42258478]
Enhancers that have rs12199356[chr6:42258478]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 42254359 42267679 enh38998
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Esophagus Astrocyte Lung (PC-9) Bone (Osteoblast) Blood (GM12878) Colon (HCT116) Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Stomach
chr6 42258421 42258504 vista51955
VISTA
Transcript factors that have rs12199356[chr6:42258478]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 42258468 42258489 IRF1 JASPAR yes 70364461
chr6 42258468 42258489 IRF1 JASPAR yes 101704758
chr6 42258469 42258490 IRF1 JASPAR yes 70364462
chr6 42258469 42258490 IRF1 JASPAR yes 101704759
chr6 42258470 42258485 PRDM1 JASPAR yes 70364463
chr6 42258470 42258485 STAT2 JASPAR yes 70364464
chr6 42258470 42258485 PRDM1 JASPAR yes 101704760
chr6 42258470 42258485 STAT2 JASPAR yes 101704761
chr6 42258471 42258485 SPIC JASPAR yes 70364465
chr6 42258471 42258485 STAT1 JASPAR yes 70364466
chr6 42258471 42258485 SPIC JASPAR yes 101704762
chr6 42258471 42258485 STAT1 JASPAR yes 101704763
chr6 42258472 42258486 SPIC JASPAR yes 70364467
chr6 42258472 42258486 SPIC JASPAR yes 101704764
chr6 42258473 42258494 IRF1 JASPAR yes 70364468
chr6 42258473 42258494 IRF1 JASPAR yes 101704765
chr6 42258474 42258495 IRF1 JASPAR yes 70364469
chr6 42258474 42258495 IRF1 JASPAR yes 101704766
chr6 42258475 42258480 ETS2 TRANSFAC yes 70364470
chr6 42258475 42258480 ETS2 TRANSFAC yes 101704767
chr6 42258475 42258496 IRF1 JASPAR yes 70364471
chr6 42258475 42258496 IRF1 JASPAR yes 101704768
chr6 42258476 42258497 IRF1 JASPAR yes 70364472
chr6 42258476 42258497 IRF1 JASPAR yes 101704769
chr6 42258477 42258492 FOXP1 JASPAR yes 70364473
chr6 42258477 42258492 FOXP1 JASPAR yes 101704770
chr6 42258477 42258498 IRF1 JASPAR yes 70364474
chr6 42258477 42258498 IRF1 JASPAR yes 101704771
chr6 42258478 42258493 FOXP1 JASPAR yes 70364475
chr6 42258478 42258493 FOXP1 JASPAR yes 101704772
chr6 42258478 42258499 IRF1 JASPAR yes 70364476
chr6 42258478 42258499 IRF1 JASPAR yes 101704773
Genes associated with rs12199356[chr6:42258478], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More