EnhancerDB
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  3. rs12228899[chr12:125183822]
Enhancers that have rs12228899[chr12:125183822]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12228899[chr12:125183822]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125182375 125184849 ZBTB33 GTRD no Lung (A549) 21581819
chr12 125182602 125184013 ZBTB33 GTRD no Lung (A549) 21581820
chr12 125182602 125184115 ZBTB33 GTRD no Lung (A549) 21581821
chr12 125182621 125184142 ZNF274 GTRD no Bone Marrow (K562) 21581822
chr12 125182698 125183903 ZNF274 GTRD no Cervix (HeLa-S3) 21581824
chr12 125182718 125183871 ZNF274 GTRD no Blood (GM12878) 21581826
chr12 125182738 125183968 ZNF143 GTRD no Epithelial (MCF-7) 21581827
chr12 125182783 125183864 ZNF143 GTRD no Epithelial (MCF-7) 21581828
chr12 125182801 125184217 ZBTB33 GTRD no Lung (A549) 21581829
chr12 125182880 125183827 ZBTB33 GTRD no Lung (A549) 21581835
chr12 125182886 125184073 ZBTB33 GTRD no Lung (A549) 21581836
chr12 125182893 125184169 ZBTB33 GTRD no Lung (A549) 21581839
chr12 125182945 125184126 ZNF274 GTRD no Blood (GM12878) 21581852
chr12 125182951 125183836 ZNF274 GTRD no Bone Marrow (K562) 21581853
chr12 125182967 125183851 ZNF143 GTRD no Epithelial (MCF-7) 21581859
chr12 125182967 125184078 ZBTB33 GTRD no Lung (A549) 21581860
chr12 125183019 125183888 ZNF274 GTRD no Bone Marrow (K562) 21581880
chr12 125183076 125183957 TCF7L2 GTRD no Colon (HCT116) 21581913
chr12 125183125 125184103 TCF7L2 GTRD no Colon (HCT116) 21581939
chr12 125183492 125183868 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21581964
chr12 125183818 125183823 ATF1 TRANSFAC yes 124410389
Genes associated with rs12228899[chr12:125183822], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More