EnhancerDB
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  3. rs12260643[chr10:32039987]
Enhancers that have rs12260643[chr10:32039987]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr10 32032398 32053515 enh1162
Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12260643[chr10:32039987]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr10 32039716 32040332 ZNF274 GTRD no Bone Marrow (K562) 107907675
chr10 32039984 32039993 ZEB1 JASPAR yes 126493658
chr10 32039984 32039999 SCRT1 JASPAR yes 126493659
chr10 32039985 32039995 FIGLA JASPAR yes 126493660
chr10 32039985 32039995 ID4 JASPAR yes 126493661
chr10 32039985 32039995 TCF3 JASPAR yes 126493662
chr10 32039985 32039995 TCF4 JASPAR yes 126493663
chr10 32039986 32039995 SNAI2 JASPAR yes 126493664
chr10 32039987 32039992 USF2 TRANSFAC yes 126493665
Genes associated with rs12260643[chr10:32039987], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More