EnhancerDB
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  3. rs12300774[chr12:125200447]
Enhancers that have rs12300774[chr12:125200447]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12300774[chr12:125200447]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125199893 125200469 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21582220
chr12 125199903 125200479 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582221
chr12 125199942 125200458 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582222
chr12 125199950 125200460 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582223
chr12 125199971 125200631 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582224
chr12 125199977 125200633 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21582226
chr12 125200007 125200537 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582228
chr12 125200011 125200467 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582229
chr12 125200048 125200552 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582234
chr12 125200060 125200450 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21582236
chr12 125200064 125200520 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582237
chr12 125200065 125200501 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21582238
chr12 125200241 125200531 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21582241
chr12 125200262 125200542 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21582242
chr12 125200287 125200583 POL24H8 ENCODE Uniform TFBS no Brain (SK-N-MC) 21582243
chr12 125200312 125200648 POL24H8 ENCODE Uniform TFBS no Brain (SK-N-MC) 21582244
chr12 125200432 125200453 REST JASPAR yes 124412714
chr12 125200433 125200452 REST JASPAR yes 124412715
Genes associated with rs12300774[chr12:125200447], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr12 124456392 124499986 + ZNF664 ENSG00000179195.11 124456392 700461 Esophagus 0.0227251 12677
chr12 125261402 125367214 - SCARB1 ENSG00000073060.11 125367214 60955 Uterus 0.945979 12680