EnhancerDB
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  3. rs12422288[chr12:125185579]
Enhancers that have rs12422288[chr12:125185579]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12422288[chr12:125185579]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125184986 125187706 TCF7L2 GTRD no Colon (HCT116) 21581969
chr12 125184986 125187706 TCF7L2 GTRD no Colon (HCT116) 108069467
chr12 125185003 125187668 TCF7L2 GTRD no Colon (HCT116) 21581971
chr12 125185003 125187668 TCF7L2 GTRD no Colon (HCT116) 108069468
chr12 125185010 125186427 ZNF274 GTRD no Bone Marrow (K562) 21581972
chr12 125185010 125186427 ZNF274 GTRD no Bone Marrow (K562) 108069469
chr12 125185017 125187740 TCF7L2 GTRD no Colon (HCT116) 21581973
chr12 125185017 125187740 TCF7L2 GTRD no Colon (HCT116) 108069470
chr12 125185076 125187752 ZNF143 GTRD no Epithelial (MCF-7) 21581974
chr12 125185076 125187752 ZNF143 GTRD no Epithelial (MCF-7) 108069471
chr12 125185090 125185773 ZBTB33 GTRD no Lung (A549) 21581975
chr12 125185108 125185596 SOX2 GTRD no Neural Stem Cells (H9) 21581976
chr12 125185119 125186687 ZNF274 GTRD no Bone Marrow (K562) 21581977
chr12 125185119 125186687 ZNF274 GTRD no Bone Marrow (K562) 108069472
chr12 125185156 125186569 SOX2 GTRD no Neural Stem Cells (H9) 21581979
chr12 125185156 125186569 SOX2 GTRD no Neural Stem Cells (H9) 108069473
chr12 125185169 125185664 ZNF274 GTRD no Bone Marrow (K562) 21581980
chr12 125185184 125187706 ZNF143 GTRD no Epithelial (MCF-7) 21581981
chr12 125185184 125187706 ZNF143 GTRD no Epithelial (MCF-7) 108069474
chr12 125185185 125185652 ZNF274 GTRD no Bone Marrow (K562) 21581982
chr12 125185203 125185793 ZNF274 GTRD no Bone Marrow (K562) 21581983
chr12 125185213 125187686 TCF7L2 GTRD no Colon (HCT116) 21581984
chr12 125185213 125187686 TCF7L2 GTRD no Colon (HCT116) 108069475
chr12 125185216 125187234 ZNF143 GTRD no Epithelial (MCF-7) 21581985
chr12 125185216 125187234 ZNF143 GTRD no Epithelial (MCF-7) 108069476
chr12 125185251 125186727 ZNF143 GTRD no Epithelial (MCF-7) 21581986
chr12 125185251 125186727 ZNF143 GTRD no Epithelial (MCF-7) 108069477
chr12 125185308 125187789 TCF7L2 GTRD no Colon (HCT116) 21581988
chr12 125185308 125187789 TCF7L2 GTRD no Colon (HCT116) 108069478
chr12 125185347 125186431 ZBTB33 GTRD no Lung (A549) 21581990
chr12 125185347 125186431 ZBTB33 GTRD no Lung (A549) 108069479
chr12 125185368 125185778 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21581991
chr12 125185368 125187064 ZNF274 GTRD no Bone Marrow (K562) 21581992
chr12 125185368 125187064 ZNF274 GTRD no Bone Marrow (K562) 108069480
chr12 125185387 125187710 TCF7L2 GTRD no Colon (HCT116) 21581993
chr12 125185387 125187710 TCF7L2 GTRD no Colon (HCT116) 108069481
chr12 125185389 125186570 ZBTB33 GTRD no Lung (A549) 21581994
chr12 125185389 125186570 ZBTB33 GTRD no Lung (A549) 108069482
chr12 125185485 125187059 ZNF143 GTRD no Epithelial (MCF-7) 21581995
chr12 125185485 125187059 ZNF143 GTRD no Epithelial (MCF-7) 108069483
chr12 125185530 125187641 TCF7L2 GTRD no Colon (HCT116) 21581996
chr12 125185530 125187641 TCF7L2 GTRD no Colon (HCT116) 108069484
chr12 125185537 125186192 ZBTB33 GTRD no Lung (A549) 21581997
chr12 125185537 125186192 ZBTB33 GTRD no Lung (A549) 108069485
chr12 125185566 125186704 ZBTB33 GTRD no Lung (A549) 21581998
chr12 125185566 125186704 ZBTB33 GTRD no Lung (A549) 108069486
chr12 125185572 125186860 ZNF143 GTRD no Epithelial (MCF-7) 21581999
chr12 125185572 125186860 ZNF143 GTRD no Epithelial (MCF-7) 108069487
chr12 125185575 125186692 ZNF143 GTRD no Epithelial (MCF-7) 21582000
chr12 125185575 125186692 ZNF143 GTRD no Epithelial (MCF-7) 108069488
chr12 125185576 125185584 YY1 TRANSFAC yes 124410604
chr12 125185579 125185585 YY1 JASPAR yes 124410605
Genes associated with rs12422288[chr12:125185579], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More