EnhancerDB
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  3. rs12468899[chr2:102426140]
Enhancers that have rs12468899[chr2:102426140]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 102416803 102440155 enh18762
Brain (SK-N-MC) Liver Astrocyte Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12468899[chr2:102426140]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 102426130 102426140 HMBOX1 JASPAR yes 75842553
chr2 102426135 102426149 RORA JASPAR yes 75842554
chr2 102426136 102426145 NKX3-2 JASPAR yes 75842555
Genes associated with rs12468899[chr2:102426140], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr2 102313312 102511149 + MAP4K4 ENSG00000071054.11 102313312 0 Pancreas 0.00919466 2634