EnhancerDB
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  3. rs1247420[chr10:29909555]
Enhancers that have rs1247420[chr10:29909555]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr10 29894589 29921854 enh13094
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Brain (SK-N-MC) Esophagus Astrocyte Brain (SK-N-SH) Stomach Muscle (A673) Placenta Uterus Lung (PC-9) Breast Pancreas (Panc1) Neural Stem Cells (H9) Heart
chr10 29909517 29909915 vista6946
VISTA
Transcript factors that have rs1247420[chr10:29909555]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr10 29908960 29909558 ZNF274 GTRD no Blood (GM12878) 107905904
chr10 29909548 29909569 IRF1 JASPAR yes 21067364
chr10 29909548 29909569 IRF1 JASPAR yes 126332471
chr10 29909549 29909570 IRF1 JASPAR yes 21067365
chr10 29909549 29909570 IRF1 JASPAR yes 126332472
chr10 29909554 29909569 MEF2A JASPAR yes 21067366
chr10 29909554 29909569 MEF2A JASPAR yes 126332473
chr10 29909555 29909570 FOXP1 JASPAR yes 21067367
chr10 29909555 29909570 MEF2C JASPAR yes 21067368
chr10 29909555 29909570 FOXP1 JASPAR yes 126332474
chr10 29909555 29909570 MEF2C JASPAR yes 126332475
chr10 29909555 29909576 IRF1 JASPAR yes 21067369
chr10 29909555 29909576 IRF1 JASPAR yes 126332476
Genes associated with rs1247420[chr10:29909555], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More