EnhancerDB
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  3. rs12561886[chr1:16128228]
Enhancers that have rs12561886[chr1:16128228]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16111145 16132915 enh11541
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs12561886[chr1:16128228]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16128214 16128229 FOXA1 JASPAR yes 27003190
chr1 16128215 16128230 FOXP1 JASPAR yes 27003192
chr1 16128216 16128228 FOXC2 JASPAR yes 27003193
chr1 16128216 16128230 ONECUT2 JASPAR yes 27003194
chr1 16128216 16128230 ONECUT3 JASPAR yes 27003195
chr1 16128217 16128228 FOXB1 JASPAR yes 27003196
chr1 16128217 16128228 FOXC1 JASPAR yes 27003197
chr1 16128220 16128232 FOXC2 JASPAR yes 27003199
Genes associated with rs12561886[chr1:16128228], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More