EnhancerDB
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  3. rs12564983[chr1:171411570]
Enhancers that have rs12564983[chr1:171411570]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs12564983[chr1:171411570]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171411295 171411752 TCF7L2 GTRD no Colon (HCT116) 21349739
chr1 171411570 171411579 CDX1 JASPAR yes 33081708
chr1 171411570 171411580 HOXC10 JASPAR yes 33081709
Genes associated with rs12564983[chr1:171411570], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More