EnhancerDB
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  3. rs12566399[chr1:19753127]
Enhancers that have rs12566399[chr1:19753127]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs12566399[chr1:19753127]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19753122 19753135 ELF1 JASPAR yes 27188677
chr1 19753123 19753130 SPI1 JASPAR yes 27188678
chr1 19753123 19753131 EHF JASPAR yes 27188679
chr1 19753123 19753131 FEV JASPAR yes 27188680
Genes associated with rs12566399[chr1:19753127], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More