EnhancerDB
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  3. rs12739212[chr1:27050578]
Enhancers that have rs12739212[chr1:27050578]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27041525 27053715 enh11655
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 27049620 27050905 vista21
VISTA
Transcript factors that have rs12739212[chr1:27050578]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27050573 27050584 HOXA10 JASPAR yes 27653390
chr1 27050573 27050584 HOXA10 JASPAR yes 71124671
chr1 27050573 27050588 HNF1A JASPAR yes 27653391
chr1 27050573 27050588 HNF1A JASPAR yes 71124672
chr1 27050574 27050584 GSX2 JASPAR yes 27653392
chr1 27050574 27050584 HOXB2 JASPAR yes 27653393
chr1 27050574 27050584 HOXB3 JASPAR yes 27653394
chr1 27050574 27050584 MNX1 JASPAR yes 27653395
chr1 27050574 27050584 POU6F1 JASPAR yes 27653396
chr1 27050574 27050584 GSX2 JASPAR yes 71124673
chr1 27050574 27050584 HOXB2 JASPAR yes 71124674
chr1 27050574 27050584 HOXB3 JASPAR yes 71124675
chr1 27050574 27050584 MNX1 JASPAR yes 71124676
chr1 27050574 27050584 POU6F1 JASPAR yes 71124677
chr1 27050574 27050587 HNF1B JASPAR yes 27653397
chr1 27050574 27050587 HNF1B JASPAR yes 71124678
chr1 27050575 27050583 LMX1A JASPAR yes 27653398
chr1 27050575 27050583 LMX1B JASPAR yes 27653399
chr1 27050575 27050583 NKX6-1 JASPAR yes 27653400
chr1 27050575 27050583 NKX6-2 JASPAR yes 27653401
chr1 27050575 27050583 VAX1 JASPAR yes 27653402
chr1 27050575 27050583 VAX2 JASPAR yes 27653403
chr1 27050575 27050583 VSX1 JASPAR yes 27653404
chr1 27050575 27050583 VSX2 JASPAR yes 27653405
chr1 27050575 27050583 LMX1A JASPAR yes 71124679
chr1 27050575 27050583 LMX1B JASPAR yes 71124680
chr1 27050575 27050583 NKX6-1 JASPAR yes 71124681
chr1 27050575 27050583 NKX6-2 JASPAR yes 71124682
chr1 27050575 27050583 VAX1 JASPAR yes 71124683
chr1 27050575 27050583 VAX2 JASPAR yes 71124684
chr1 27050575 27050583 VSX1 JASPAR yes 71124685
chr1 27050575 27050583 VSX2 JASPAR yes 71124686
Genes associated with rs12739212[chr1:27050578], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 27113963 27124889 + PIGV ENSG00000060642.6 27113963 63385 Heart 0.139674 374