EnhancerDB
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Enhancers that have rs138840416[chr1:235097539]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235087405 235127975 enh996
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs138840416[chr1:235097539]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235097211 235097786 ZNF274 GTRD no Bone Marrow (K562) 21401506
chr1 235097239 235097787 ZNF274 GTRD no Bone Marrow (K562) 21401507
chr1 235097318 235097768 ZNF143 GTRD no Epithelial (MCF-7) 21401508
chr1 235097363 235097803 ZNF274 GTRD no Liver (HepG2) 21401509
chr1 235097397 235097709 ZNF274 GTRD no Cervix (HeLa-S3) 21401510
chr1 235097413 235097691 ZNF274 GTRD no Liver (HepG2) 21401511
chr1 235097467 235097791 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21401512
chr1 235097468 235098857 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21401513
chr1 235097468 235098857 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107884718
chr1 235097485 235097801 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21401514
chr1 235097505 235097909 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21401515
chr1 235097505 235097909 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107884719
chr1 235097522 235097539 RXRA JASPAR yes 36335170
chr1 235097536 235097547 E2F4 JASPAR yes 36335174
chr1 235097536 235097547 E2F6 JASPAR yes 36335175
chr1 235097537 235097548 E2F1 JASPAR yes 36335176
Genes associated with rs138840416[chr1:235097539], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More