EnhancerDB
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  3. rs139052502[chr1:19787590]
Enhancers that have rs139052502[chr1:19787590]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs139052502[chr1:19787590]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19787579 19787599 RREB1 JASPAR yes 27193576
chr1 19787582 19787590 SP1 TRANSFAC yes 27193580
chr1 19787582 19787590 WT1 TRANSFAC yes 27193581
chr1 19787583 19787598 NR2C2 JASPAR yes 27193582
chr1 19787584 19787591 SP1 TRANSFAC yes 27193583
chr1 19787584 19787594 SP1 JASPAR yes 27193584
chr1 19787584 19787598 PLAG1 JASPAR yes 27193585
chr1 19787584 19787605 ZNF263 JASPAR yes 27193586
chr1 19787585 19787593 SP1 TRANSFAC yes 27193587
chr1 19787585 19787606 ZNF263 JASPAR yes 27193588
chr1 19787586 19787591 SP1 TRANSFAC yes 27193589
chr1 19787586 19787597 E2F4 JASPAR yes 27193590
chr1 19787587 19787592 SP1 TRANSFAC yes 27193591
chr1 19787587 19787593 SP1 TRANSFAC yes 27193592
chr1 19787587 19787597 SP1 JASPAR yes 27193593
chr1 19787588 19787598 ZNF740 JASPAR yes 27193594
chr1 19787589 19787599 SP1 JASPAR yes 27193595
chr1 19787589 19787599 ZNF740 JASPAR yes 27193596
chr1 19787589 19787609 RREB1 JASPAR yes 27193597
chr1 19787590 19787600 SP1 JASPAR yes 27193598
chr1 19787590 19787600 ZNF740 JASPAR yes 27193599
Genes associated with rs139052502[chr1:19787590], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More