EnhancerDB
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  3. rs139140564[chr1:235159145]
Enhancers that have rs139140564[chr1:235159145]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235130325 235168235 enh997
Bone Marrow (K562) Liver Astrocyte Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs139140564[chr1:235159145]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235158589 235159213 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403203
chr1 235158589 235159213 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885647
chr1 235158737 235159167 ZNF274 GTRD no Liver (HepG2) 21403205
chr1 235158737 235159167 ZNF274 GTRD no Liver (HepG2) 107885649
chr1 235158741 235159193 ZNF274 GTRD no Liver (HepG2) 21403206
chr1 235158741 235159193 ZNF274 GTRD no Liver (HepG2) 107885650
chr1 235158826 235159239 ZNF274 GTRD no Liver (HepG2) 21403207
chr1 235159086 235159676 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403208
chr1 235159118 235159528 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403209
chr1 235159138 235159442 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403210
chr1 235159141 235159156 FOXP1 JASPAR yes 36343749
chr1 235159141 235159519 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403211
chr1 235159142 235159153 FOXA1 JASPAR yes 36343750
chr1 235159142 235159153 FOXH1 JASPAR yes 36343751
chr1 235159142 235159157 FOXA1 JASPAR yes 36343752
chr1 235159143 235159155 FOXC2 JASPAR yes 36343753
chr1 235159144 235159155 FOXP2 JASPAR yes 36343754
chr1 235159144 235159156 FOXI1 JASPAR yes 36343755
Genes associated with rs139140564[chr1:235159145], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More