EnhancerDB
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  3. rs139313090[chr1:202004365]
Enhancers that have rs139313090[chr1:202004365]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201996265 202020435 enh12533
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Epithelial (MCF-7) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Muscle (A673)
Transcript factors that have rs139313090[chr1:202004365]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 202003887 202004537 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365500
chr1 202003887 202004537 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107857374
chr1 202003894 202004424 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365502
chr1 202003894 202004424 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107857376
chr1 202003901 202004417 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365504
chr1 202003901 202004417 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107857378
chr1 202003911 202004367 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365505
chr1 202003911 202004367 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107857379
chr1 202003953 202004437 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107857385
chr1 202003954 202004458 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365509
chr1 202003954 202004458 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107857386
chr1 202003959 202004652 TCF12 UCSC Txn Factor no Conserved 107857388
chr1 202003959 202004652 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107857389
chr1 202003967 202004646 EP300 UCSC Txn Factor no Conserved 107857394
chr1 202003967 202004646 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107857395
chr1 202004051 202004561 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365529
chr1 202004051 202004561 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107857419
chr1 202004122 202004642 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107857422
chr1 202004150 202004370 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21365531
chr1 202004302 202004758 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21365532
chr1 202004353 202004365 PKNOX1 JASPAR yes 34544246
chr1 202004353 202004365 PKNOX2 JASPAR yes 34544247
chr1 202004353 202004365 TGIF1 JASPAR yes 34544248
chr1 202004353 202004365 TGIF2 JASPAR yes 34544249
chr1 202004359 202004370 CDX2 JASPAR yes 34544250
chr1 202004360 202004371 HOXA10 JASPAR yes 34544251
chr1 202004360 202004371 HOXC11 JASPAR yes 34544252
chr1 202004360 202004371 HOXC12 JASPAR yes 34544253
chr1 202004360 202004371 HOXC13 JASPAR yes 34544254
chr1 202004360 202004371 HOXD12 JASPAR yes 34544255
chr1 202004361 202004370 CDX1 JASPAR yes 34544256
chr1 202004361 202004371 HOXA13 JASPAR yes 34544257
chr1 202004361 202004371 HOXC10 JASPAR yes 34544258
chr1 202004361 202004371 HOXD11 JASPAR yes 34544259
chr1 202004361 202004371 HOXD13 JASPAR yes 34544260
Genes associated with rs139313090[chr1:202004365], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More