EnhancerDB
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  3. rs139400728[chr12:125216773]
Enhancers that have rs139400728[chr12:125216773]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs139400728[chr12:125216773]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125216635 125217202 TCF7L2 GTRD no Colon (HCT116) 21582429
chr12 125216672 125217118 TCF7L2 GTRD no Colon (HCT116) 21582430
chr12 125216731 125217056 ZNF143 GTRD no Epithelial (MCF-7) 21582431
chr12 125216769 125216778 HIC2 JASPAR yes 124414961
Genes associated with rs139400728[chr12:125216773], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More