EnhancerDB
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  3. rs139480338[chr5:173180683]
Enhancers that have rs139480338[chr5:173180683]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 173178093 173268555 enh8886
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs139480338[chr5:173180683]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 173180363 173181019 E2F1 UCSC Txn Factor no Conserved 108537582
chr5 173180386 173180739 CEBPB UCSC Txn Factor no Conserved 108537583
chr5 173180424 173180781 TFAP2C UCSC Txn Factor no Conserved 108537584
chr5 173180440 173180742 TFAP2A UCSC Txn Factor no Conserved 108537585
chr5 173180677 173180695 E2F3 JASPAR yes 67900541
chr5 173180678 173180694 E2F2 JASPAR yes 67900542
chr5 173180680 173180692 E2F1 JASPAR yes 67900543
Genes associated with rs139480338[chr5:173180683], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More