EnhancerDB
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  3. rs139563879[chr3:149340458]
Enhancers that have rs139563879[chr3:149340458]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 149284825 149341275 enh21022
Brain (SK-N-MC) Liver Colon (HCT116) Uterus Kidney Stomach Skin (Keratinocyte) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs139563879[chr3:149340458]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 149340449 149340461 YY1 JASPAR yes 6515647
chr3 149340451 149340462 YY2 JASPAR yes 6515648
chr3 149340454 149340475 IRF1 JASPAR yes 6515649
chr3 149340456 149340470 IRF7 JASPAR yes 6515650
chr3 149340456 149340471 IRF9 JASPAR yes 6515651
chr3 149340457 149340475 IRF2 JASPAR yes 6515652
chr3 149340458 149340470 IRF1 JASPAR yes 6515653
chr3 149340458 149340472 STAT1 JASPAR yes 6515654
chr3 149340458 149340473 STAT2 JASPAR yes 6515655
chr3 149340458 149340476 IRF2 JASPAR yes 6515656
Genes associated with rs139563879[chr3:149340458], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More