EnhancerDB
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  3. rs139580022[chr19:2489485]
Enhancers that have rs139580022[chr19:2489485]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2481141 2509475 enh4958
Bone Marrow (K562) Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs139580022[chr19:2489485]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2487107 2490254 TCF7L2 GTRD no Colon (HCT116) 108360382
chr19 2487601 2489790 TCF7L2 GTRD no Colon (HCT116) 108360383
chr19 2487661 2489954 TCF7L2 GTRD no Colon (HCT116) 108360384
chr19 2487763 2490018 TCF7L2 GTRD no Colon (HCT116) 108360385
chr19 2487775 2489823 TCF7L2 GTRD no Colon (HCT116) 108360386
chr19 2487933 2489965 TCF7L2 GTRD no Colon (HCT116) 108360387
chr19 2487990 2490105 ZNF274 GTRD no Blood (GM12878) 108360388
chr19 2488428 2489968 ZNF274 GTRD no Blood (GM12878) 108360389
chr19 2488527 2489703 ZBTB33 GTRD no Brain (SK-N-SH) 108360390
chr19 2488602 2490089 ZNF143 GTRD no Epithelial (MCF-7) 21835501
chr19 2488602 2490089 ZNF143 GTRD no Epithelial (MCF-7) 108360391
chr19 2488665 2490101 ZBTB33 GTRD no Lung (A549) 108360392
chr19 2488713 2489638 TCF7L2 GTRD no Colon (HCT116) 108360393
chr19 2488740 2490112 ZNF274 GTRD no Cervix (HeLa-S3) 21835502
chr19 2488740 2490112 ZNF274 GTRD no Cervix (HeLa-S3) 108360394
chr19 2488775 2489966 TCF7L2 GTRD no Colon (HCT116) 108360395
chr19 2488870 2489667 TCF7L2 GTRD no Colon (HCT116) 108360396
chr19 2488877 2489530 ZNF274 GTRD no Liver (HepG2) 21835503
chr19 2488877 2489530 ZNF274 GTRD no Liver (HepG2) 108360397
chr19 2488894 2489770 ZNF274 GTRD no Blood (GM12878) 108360398
chr19 2488953 2489795 ZNF143 GTRD no Epithelial (MCF-7) 21835504
chr19 2488953 2489795 ZNF143 GTRD no Epithelial (MCF-7) 108360400
chr19 2488956 2489946 ZNF143 GTRD no Epithelial (MCF-7) 21835505
chr19 2488956 2489946 ZNF143 GTRD no Epithelial (MCF-7) 108360401
chr19 2488966 2489632 TCF7L2 GTRD no Colon (HCT116) 108360402
chr19 2488983 2489800 ZNF274 GTRD no Cervix (HeLa-S3) 21835506
chr19 2488983 2489800 ZNF274 GTRD no Cervix (HeLa-S3) 108360403
chr19 2489023 2489679 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21835508
chr19 2489023 2489679 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108360405
chr19 2489040 2489787 ZBTB33 GTRD no Brain (SK-N-SH) 108360406
chr19 2489076 2489631 ZNF143 GTRD no Epithelial (MCF-7) 21835509
chr19 2489076 2489631 ZNF143 GTRD no Epithelial (MCF-7) 108360407
chr19 2489088 2489808 ZNF143 GTRD no Epithelial (MCF-7) 21835510
chr19 2489088 2489808 ZNF143 GTRD no Epithelial (MCF-7) 108360408
chr19 2489089 2489744 ZNF143 GTRD no Epithelial (MCF-7) 21835511
chr19 2489089 2489744 ZNF143 GTRD no Epithelial (MCF-7) 108360409
chr19 2489108 2489961 ZNF143 GTRD no Epithelial (MCF-7) 21835512
chr19 2489108 2489961 ZNF143 GTRD no Epithelial (MCF-7) 108360410
chr19 2489127 2489723 ZNF143 GTRD no Epithelial (MCF-7) 21835513
chr19 2489127 2489723 ZNF143 GTRD no Epithelial (MCF-7) 108360411
chr19 2489149 2489519 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21835514
chr19 2489149 2489519 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108360412
chr19 2489170 2489534 ZBTB33 GTRD no Lung (A549) 108360413
chr19 2489173 2489765 ZNF143 GTRD no Epithelial (MCF-7) 21835515
chr19 2489173 2489765 ZNF143 GTRD no Epithelial (MCF-7) 108360414
chr19 2489174 2489847 ZNF143 GTRD no Epithelial (MCF-7) 21835516
chr19 2489174 2489847 ZNF143 GTRD no Epithelial (MCF-7) 108360415
chr19 2489201 2489504 ZNF274 GTRD no Blood (GM12878) 108360416
chr19 2489202 2490236 ZBTB33 GTRD no Lung (A549) 108360417
chr19 2489206 2489767 ZNF143 GTRD no Epithelial (MCF-7) 21835517
chr19 2489206 2489767 ZNF143 GTRD no Epithelial (MCF-7) 108360418
chr19 2489208 2489847 ZNF143 GTRD no Epithelial (MCF-7) 21835518
chr19 2489208 2489847 ZNF143 GTRD no Epithelial (MCF-7) 108360419
chr19 2489213 2489723 ZNF274 GTRD no Blood (GM12878) 108360420
chr19 2489214 2489558 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108360421
chr19 2489216 2489688 ZBTB33 GTRD no Brain (SK-N-SH) 108360422
chr19 2489218 2489618 ZNF143 GTRD no Epithelial (MCF-7) 21835519
chr19 2489218 2489618 ZNF143 GTRD no Epithelial (MCF-7) 108360423
chr19 2489218 2489624 ZNF143 GTRD no Epithelial (MCF-7) 21835520
chr19 2489218 2489624 ZNF143 GTRD no Epithelial (MCF-7) 108360424
chr19 2489225 2489881 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21835521
chr19 2489225 2489881 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108360425
chr19 2489235 2489806 ZNF143 GTRD no Epithelial (MCF-7) 21835522
chr19 2489235 2489806 ZNF143 GTRD no Epithelial (MCF-7) 108360426
chr19 2489237 2489781 ZBTB33 GTRD no Lung (A549) 108360427
chr19 2489240 2490017 ZNF143 GTRD no Epithelial (MCF-7) 21835523
chr19 2489240 2490017 ZNF143 GTRD no Epithelial (MCF-7) 108360428
chr19 2489255 2490129 ZNF143 GTRD no Epithelial (MCF-7) 21835524
chr19 2489255 2490129 ZNF143 GTRD no Epithelial (MCF-7) 108360429
chr19 2489257 2489632 ZNF143 GTRD no Epithelial (MCF-7) 21835525
chr19 2489257 2489632 ZNF143 GTRD no Epithelial (MCF-7) 108360430
chr19 2489261 2489562 ZNF274 GTRD no Liver (HepG2) 21835526
chr19 2489261 2489562 ZNF274 GTRD no Liver (HepG2) 108360431
chr19 2489262 2489915 ZBTB33 GTRD no Lung (A549) 108360432
chr19 2489263 2489923 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21835527
chr19 2489263 2489923 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108360433
chr19 2489268 2489774 ZNF143 GTRD no Epithelial (MCF-7) 21835528
chr19 2489268 2489774 ZNF143 GTRD no Epithelial (MCF-7) 108360434
chr19 2489269 2489799 ZNF143 GTRD no Epithelial (MCF-7) 21835529
chr19 2489269 2489799 ZNF143 GTRD no Epithelial (MCF-7) 108360435
chr19 2489274 2489757 ZNF143 GTRD no Epithelial (MCF-7) 21835530
chr19 2489274 2489757 ZNF143 GTRD no Epithelial (MCF-7) 108360436
chr19 2489280 2489709 ZNF143 GTRD no Epithelial (MCF-7) 21835531
chr19 2489280 2489709 ZNF143 GTRD no Epithelial (MCF-7) 108360437
chr19 2489283 2489944 ZBTB33 GTRD no Lung (A549) 108360439
chr19 2489285 2489793 ZBTB33 GTRD no Lung (A549) 108360440
chr19 2489288 2489704 ZNF143 GTRD no Epithelial (MCF-7) 21835533
chr19 2489288 2489704 ZNF143 GTRD no Epithelial (MCF-7) 108360441
chr19 2489303 2489594 ZNF143 GTRD no Epithelial (MCF-7) 21835534
chr19 2489303 2489594 ZNF143 GTRD no Epithelial (MCF-7) 108360442
chr19 2489322 2490000 ZBTB33 GTRD no Lung (A549) 108360443
chr19 2489323 2489644 TCF7L2 GTRD no Colon (HCT116) 108360444
chr19 2489334 2489707 ZNF274 GTRD no Blood (GM12878) 108360445
chr19 2489336 2489905 ZBTB33 GTRD no Lung (A549) 108360446
chr19 2489339 2490168 ZNF274 GTRD no Blood (GM12878) 108360447
chr19 2489346 2489610 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108360448
chr19 2489350 2489675 ZNF143 GTRD no Epithelial (MCF-7) 21835535
chr19 2489350 2489675 ZNF143 GTRD no Epithelial (MCF-7) 108360449
chr19 2489355 2489677 ZNF143 GTRD no Epithelial (MCF-7) 21835536
chr19 2489355 2489677 ZNF143 GTRD no Epithelial (MCF-7) 108360450
chr19 2489385 2489955 ZNF274 GTRD no Blood (GM12878) 108360451
chr19 2489389 2489770 ZNF274 GTRD no Bone Marrow (K562) 21835537
chr19 2489389 2489770 ZNF274 GTRD no Bone Marrow (K562) 108360452
chr19 2489425 2489956 ZBTB33 GTRD no Lung (A549) 108360453
chr19 2489425 2489994 ZNF274 GTRD no Cervix (HeLa-S3) 21835538
chr19 2489425 2489994 ZNF274 GTRD no Cervix (HeLa-S3) 108360454
chr19 2489472 2489487 RFX5 JASPAR yes 112065659
chr19 2489485 2489824 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21835539
Genes associated with rs139580022[chr19:2489485], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr19 1481427 1490751 - PCSK4 ENSG00000115257.11 1490751 998734 Uterus 0.840178 16751