EnhancerDB
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  3. rs139580140[chr16:4339603]
Enhancers that have rs139580140[chr16:4339603]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 4330820 4352135 enh16514
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs139580140[chr16:4339603]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 4335970 4340905 TCF7L2 GTRD no Colon (HCT116) 21686304
chr16 4338616 4339634 ZNF143 GTRD no Epithelial (MCF-7) 21686363
chr16 4339547 4340798 ZNF143 GTRD no Epithelial (MCF-7) 21686374
chr16 4339548 4340449 ZNF143 GTRD no Epithelial (MCF-7) 21686375
chr16 4339550 4340186 TCF7L2 GTRD no Colon (HCT116) 21686376
chr16 4339565 4340260 ZNF143 GTRD no Epithelial (MCF-7) 21686377
chr16 4339572 4340204 TCF7L2 GTRD no Colon (HCT116) 21686378
chr16 4339573 4340621 ZNF143 GTRD no Epithelial (MCF-7) 21686379
chr16 4339603 4339608 SP1 TRANSFAC yes 9267039
chr16 4339603 4339615 HINFP JASPAR yes 9267040
Genes associated with rs139580140[chr16:4339603], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More