EnhancerDB
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  3. rs139797668[chr1:1778623]
Enhancers that have rs139797668[chr1:1778623]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 1770710 1799155 enh6
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs139797668[chr1:1778623]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 1778623 1778634 HOXC11 JASPAR yes 26206215
chr1 1778623 1778634 HOXC12 JASPAR yes 26206216
chr1 1778623 1778634 HOXD12 JASPAR yes 26206217
Genes associated with rs139797668[chr1:1778623], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More