EnhancerDB
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  3. rs139867607[chr12:125209020]
Enhancers that have rs139867607[chr12:125209020]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs139867607[chr12:125209020]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125208691 125209750 ZNF143 GTRD no Epithelial (MCF-7) 21582342
chr12 125208733 125209055 TCF7L2 GTRD no Colon (HCT116) 21582343
chr12 125208816 125209311 SOX2 GTRD no Neural Stem Cells (H9) 21582344
chr12 125208837 125209656 TCF7L2 GTRD no Colon (HCT116) 21582345
chr12 125209005 125209020 MEF2A JASPAR yes 124413823
chr12 125209016 125209030 POU4F1 JASPAR yes 124413828
chr12 125209016 125209032 POU4F3 JASPAR yes 124413829
chr12 125209019 125209023 YY1 TRANSFAC yes 124413830
chr12 125209020 125209032 MEF2A JASPAR yes 124413831
Genes associated with rs139867607[chr12:125209020], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr12 124457788 124800570 + FAM101A ENSG00000178882.9 124457788 408450 Pancreas 0.310728 12678