EnhancerDB
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  3. rs140104504[chr1:171393782]
Enhancers that have rs140104504[chr1:171393782]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs140104504[chr1:171393782]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171392976 171394439 ZNF143 GTRD no Epithelial (MCF-7) 21349627
chr1 171392990 171394373 ZNF143 GTRD no Epithelial (MCF-7) 21349628
chr1 171393268 171394511 ZNF143 GTRD no Epithelial (MCF-7) 21349629
chr1 171393422 171394291 ZNF143 GTRD no Epithelial (MCF-7) 21349630
chr1 171393471 171394189 ZNF143 GTRD no Epithelial (MCF-7) 21349631
chr1 171393484 171394361 ZNF143 GTRD no Epithelial (MCF-7) 21349632
chr1 171393524 171394434 ZNF143 GTRD no Epithelial (MCF-7) 21349633
chr1 171393530 171394190 ZNF143 GTRD no Epithelial (MCF-7) 21349634
chr1 171393560 171394280 ZNF143 GTRD no Epithelial (MCF-7) 21349635
chr1 171393612 171394182 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21349636
chr1 171393637 171394107 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21349637
chr1 171393775 171393792 RARA JASPAR yes 33079006
chr1 171393775 171393792 RXRA JASPAR yes 33079007
chr1 171393780 171393790 HOXC10 JASPAR yes 33079008
chr1 171393780 171393790 HOXD11 JASPAR yes 33079009
chr1 171393780 171393791 HOXA10 JASPAR yes 33079010
chr1 171393780 171393791 HOXC11 JASPAR yes 33079011
chr1 171393780 171393791 HOXC12 JASPAR yes 33079012
chr1 171393780 171393791 HOXD12 JASPAR yes 33079013
chr1 171393781 171393790 CDX1 JASPAR yes 33079014
chr1 171393781 171393792 CDX2 JASPAR yes 33079015
Genes associated with rs140104504[chr1:171393782], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More