EnhancerDB
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  3. rs1406929[chr1:230260810]
Enhancers that have rs1406929[chr1:230260810]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 230237385 230313644 enh12770
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs1406929[chr1:230260810]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 230260806 230260810 YY1 TRANSFAC yes 36023408
chr1 230260807 230260821 CREB3 JASPAR yes 36023409
chr1 230260810 230260815 ATF1 TRANSFAC yes 36023410
Genes associated with rs1406929[chr1:230260810], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 229728858 229761794 - TAF5L ENSG00000135801.5 229761794 499016 Heart 0.0439874 1935