EnhancerDB
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  3. rs141927579[chr1:52035207]
Enhancers that have rs141927579[chr1:52035207]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 52027839 52037840 enh360
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Prostate (RWPE1) Heart
Transcript factors that have rs141927579[chr1:52035207]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 52034973 52035493 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803467
chr1 52034974 52035564 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803468
chr1 52035010 52035526 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803469
chr1 52035053 52035737 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803470
chr1 52035064 52035788 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107803471
chr1 52035117 52035437 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803472
chr1 52035150 52035427 RUNX3 UCSC Txn Factor no Conserved 107803473
chr1 52035150 52035427 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803474
chr1 52035197 52035209 PKNOX1 JASPAR yes 28852032
chr1 52035197 52035209 PKNOX2 JASPAR yes 28852033
chr1 52035197 52035209 TGIF1 JASPAR yes 28852034
chr1 52035197 52035209 TGIF2 JASPAR yes 28852035
chr1 52035203 52035207 NFE TRANSFAC yes 28852036
Genes associated with rs141927579[chr1:52035207], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More