EnhancerDB
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  3. rs142456480[chr1:173379261]
Enhancers that have rs142456480[chr1:173379261]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 173367664 173402717 enh734
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Muscle (A673)
Transcript factors that have rs142456480[chr1:173379261]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 173379063 173379360 SOX2 GTRD no Neural Stem Cells (H9) 21351279
chr1 173379253 173379267 E2F7 JASPAR yes 33196614
chr1 173379255 173379266 E2F1 JASPAR yes 33196615
chr1 173379256 173379261 SP1 TRANSFAC yes 33196616
chr1 173379256 173379267 E2F4 JASPAR yes 33196617
chr1 173379256 173379267 E2F6 JASPAR yes 33196618
chr1 173379257 173379262 SP1 TRANSFAC yes 33196619
Genes associated with rs142456480[chr1:173379261], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More