EnhancerDB
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  3. rs142778928[chr5:172277216]
Enhancers that have rs142778928[chr5:172277216]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 172258805 172341224 enh22817
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs142778928[chr5:172277216]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 172277204 172277218 RORA JASPAR yes 67834543
chr5 172277207 172277217 RORA JASPAR yes 67834544
chr5 172277210 172277216 ESR1 TRANSFAC yes 67834545
chr5 172277212 172277216 ESR1 TRANSFAC yes 67834546
chr5 172277214 172277222 MGA JASPAR yes 67834547
chr5 172277214 172277222 TBX15 JASPAR yes 67834548
chr5 172277214 172277222 TBX1 JASPAR yes 67834549
chr5 172277214 172277222 TBX4 JASPAR yes 67834550
chr5 172277214 172277222 TBX5 JASPAR yes 67834551
chr5 172277215 172277225 NKX2-3 JASPAR yes 67834552
chr5 172277216 172277225 NKX2-8 JASPAR yes 67834553
Genes associated with rs142778928[chr5:172277216], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More