EnhancerDB
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  3. rs142788674[chr1:1793532]
Enhancers that have rs142788674[chr1:1793532]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 1770710 1799155 enh6
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs142788674[chr1:1793532]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 1792784 1794069 AR GTRD no Prostate (PC-3) 107801799
chr1 1793529 1793538 ZEB1 JASPAR yes 26208416
chr1 1793529 1793542 ZBTB18 JASPAR yes 26208417
chr1 1793530 1793540 FIGLA JASPAR yes 26208418
chr1 1793530 1793540 ID4 JASPAR yes 26208419
chr1 1793530 1793540 TCF3 JASPAR yes 26208420
chr1 1793530 1793540 TCF4 JASPAR yes 26208421
chr1 1793531 1793540 SNAI2 JASPAR yes 26208422
chr1 1793532 1793537 USF2 TRANSFAC yes 26208423
Genes associated with rs142788674[chr1:1793532], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More