EnhancerDB
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  3. rs143253250[chr1:235149547]
Enhancers that have rs143253250[chr1:235149547]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235130325 235168235 enh997
Bone Marrow (K562) Liver Astrocyte Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs143253250[chr1:235149547]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235146383 235149741 POLR2A UCSC Txn Factor no Conserved 107885561
chr1 235146795 235149741 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402975
chr1 235146795 235149741 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885567
chr1 235149352 235149727 ZNF274 GTRD no Blood (GM12878) 21403116
chr1 235149544 235149554 GABPA JASPAR yes 36342333
chr1 235149546 235149552 ETS1 JASPAR yes 36342334
chr1 235149546 235149552 SPI1 JASPAR yes 36342335
chr1 235149546 235149556 ELK1 JASPAR yes 36342336
Genes associated with rs143253250[chr1:235149547], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More