EnhancerDB
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  3. rs143717962[chr12:125190047]
Enhancers that have rs143717962[chr12:125190047]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs143717962[chr12:125190047]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125190034 125190048 GLIS2 JASPAR yes 124411243
chr12 125190034 125190048 GLIS3 JASPAR yes 124411244
chr12 125190035 125190047 TFAP2A JASPAR yes 124411245
chr12 125190035 125190047 TFAP2B JASPAR yes 124411246
chr12 125190036 125190047 TFAP2A JASPAR yes 124411247
chr12 125190036 125190047 TFAP2B JASPAR yes 124411248
chr12 125190042 125190047 SP1 TRANSFAC yes 124411250
Genes associated with rs143717962[chr12:125190047], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More