EnhancerDB
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  3. rs143936474[chr11:122585259]
Enhancers that have rs143936474[chr11:122585259]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr11 122527985 122597555 enh2064
Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr11 122584764 122585535 vista11878
VISTA
Transcript factors that have rs143936474[chr11:122585259]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr11 122584480 122585290 ZBTB33 GTRD no Brain (SK-N-SH) 21519672
chr11 122584480 122585290 ZBTB33 GTRD no Brain (SK-N-SH) 108004388
chr11 122584578 122585267 ZBTB33 GTRD no Brain (SK-N-SH) 21519675
chr11 122584578 122585267 ZBTB33 GTRD no Brain (SK-N-SH) 108004391
chr11 122585065 122585360 SOX2 GTRD no Neural Stem Cells (H9) 21519685
chr11 122585065 122585360 SOX2 GTRD no Neural Stem Cells (H9) 108004403
chr11 122585246 122585261 PRDM1 JASPAR yes 42023307
chr11 122585246 122585261 PRDM1 JASPAR yes 114146123
chr11 122585255 122585273 RARA JASPAR yes 42023308
chr11 122585255 122585273 RARA JASPAR yes 114146124
Genes associated with rs143936474[chr11:122585259], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More